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Dr. Ramesh Rijal

Dr. Ramesh Rijal

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Assistant Professor of Biological Sciences

Bio

In human lungs, macrophages are key defenders against bacterial infections. They ingest invading bacteria, and phagosomes containing these bacteria fuse with lysosomes to form phagolysosomes, where the bacteria are killed. However, certain pathogens, such as Mycobacterium tuberculosis (Mtb), Legionella pneumophila and Listeria monocytogenes, escape killing in phagolysosomes. Although antibiotics are available to target these pathogens, the rise of multidrug-resistant strains has further complicated treatment efforts. A key factor in the development of drug resistance is bacteria’s ability to tolerate a range of stresses, which is essential for their survival under conditions of stress, whether from host cell defenses or antibiotic treatment.

My lab investigates how polyphosphate (polyP), a phosphate polymer secreted by Mtb and other pathogens, prevents their killing in human macrophages, as well as protects bacteria from antibiotics. In a first line of research, we study how bacterial polyP modulates macrophage functions, including phagosome acidification, lysosome activity, autophagy, and cell polarization, facilitating bacterial survival within phagosomes. In a second line of research, we study how secreted polyP contributes to bacterial physiological adaptation to stress, cell envelope biogenesis, and biofilm formation. By identifying and targeting components of the polyP signal transduction pathway with small molecule inhibitors, we aim to render bacteria vulnerable to complete eradication by human immune cells. Our ultimate goal is to develop innovative strategies to effectively overcome drug tolerance and combat bacterial diseases. 

My lab is actively seeking motivated and hard-working undergraduates and graduate students and, in the future, postdoctoral fellows to join my team.

  • Postdoctoral Research Associate - Texas A&M University, 2024
  • PhD - Biological Sciences, University of Cologne, 2016
  • MS - Biochemistry, University of Cologne, 2012
  • BS - Biochemistry, Pokhara University, 2009
  • Microbial Genetics (477/577)
  • Microbial Genetics Lab (477L/577L)
  • Consalvo KM*, Rijal R*, Beruvides SL, Mitchell R, Beauchemin K, Collins D, Scoggin J, Scott J, and Gomer RH. Elucidating the roles of PTEN and PTEN-like phosphatase CnrN during eukaryotic chemorepulsion. *Co-first authors. J Cell Sci. 2024 Aug 1;137(15):jcs262054. PMCID:
  • Rijal R* and Gomer RH*. Gallein potentiates isoniazid's ability to suppress Mycobacterium tuberculosisgrowth. *Corresponding authors. Front. Microbiol. 2024 Apr 15:15:1369763. PMCID:
  • Rijal R and Gomer RH. Proteomic analysis of Dictyostelium discoideum by mass spectrometry. (Invited book chapter). Methods Mol Biol. 2024:2814:247-255. PMCID:
  • Rahman RJ, Rijal R*, Jing S, Chen TA, Ismail I, and Gomer RH. Polyphosphate uses mTOR, pyrophosphate, and Rho GTPase components to potentiate bacterial survival in Dictyostelium. *Mentored and supervised. mBio. 2023 Sep 27;e0193923. PMCID:
  • Rijal R*, Ismail I, Jing S, and Gomer RH. Starvation induces extracellular accumulation of polyphosphate in Dictyostelium discoideum to inhibit macropinocytosis, phagocytosis, and exocytosis. *Corresponding author. Int J Mol Sci. 2023 Mar 21; 24(6), 5923. PMCID:
  • Rijal R, Kirolos SA, Rahman RJ, Gomer RH. Dictyostelium discoideum cells retain nutrients when the cells are about to overgrow their food source. J Cell Sci. 2022 Aug 26; jcs.260107. PMCID:
  • Kirolos SA, Procaccia SR, Groover KE, Das R, Rijal R, and Gomer RH. Identification of novel proteins in the Dictyostelium discoideum chemorepulsion pathway using REMI. MicroPubl Biol. 2022 May 5:10.17912. PMCID:
  • Riehl J, Rijal R, Clemen CS, Hofmann A, Eichinger L. Domain organisation of the UBX domain containing protein 9 (UBXD9) and analysis of its interactions with the homohexameric AAA+ ATPase p97 (VCP). Front Cell Dev Biol. 2021 Sep 23;9:748860. PMCID:
  • Kirolos SA, Rijal R, Consalvo KM, Gomer RH. Using Dictyostelium to develop therapeutics for acute respiratory distress syndrome. Front Cell Dev Biol. 2021 Jul 19;9:710005. PMCID:
  • Tang Y, Rijal R, Zimmerhanzel DE, McCullough JR, Cadena LA, Gomer RH. An Autocrine Negative Feedback Loop Inhibits D. discoideum Proliferation Through Pathways Including IP3/ Ca2+. mBio. 2021 Jun 29;12(3):e0134721. PMCID:
  • Rijal R, Cadena LA, Smith MR, Carr JF, Gomer RH. Polyphosphate is an extracellular signal that can facilitate bacterial survival in eukaryotic cells. Proc Natl Acad Sci U S A. 2020 Dec 15;117(50):31923-31934. PMCID:
  • Karow M, Fischer S, Meßling S, Konertz R, Riehl J, Xiong Qiuhong, Rijal R, Wagle P, Clemen CS, Eichinger Ludwig. Functional Characterisation of the Autophagy ATG12~5/16 Complex in Dictyostelium discoideum. Cells. 2020 May 9;9(5):1179. PMCID:
  • Fischer S, Rijal R, Frommolt P, Wagle P, Konertz R, Faix J, Meßling S, Eichinger L. Functional Characterization of Ubiquitin-Like Core Autophagy Protein ATG12 in Dictyostelium discoideum. Cells. 2019 Jan 19;8(1). PMCID:
  • Consalvo KM, Rijal R, Tang Y, Kirolos SA, Smith MR, Gomer RH. Extracellular signaling in Dictyostelium. Int J Dev Biol. 2019;63(8-9-10):395-405. PMCID:
  • Rijal R, Consalvo KM, Lindsey CK, Gomer RH. An endogenous chemorepellent directs cell movement by inhibiting pseudopods at one side of cells. Mol Biol Cell. 2019 Jan 15;30(2):242-255. PMCID:  
  • Song L, Rijal R, Karow M, Stumpf M, Hahn O, Park L, Insall R, Schröder R, Hofmann A, Clemen CS, Eichinger L. Expression of N471D strumpellin leads to defects in the endolysosomal system. Dis Model Mech. 2018 Sep 13;11(9). PMCID:  
  • Rijal R, Arhzaouy K, Strucksberg KH, Cross M, Hofmann A, Schröder R, Clemen CS, Eichinger L. Mutant p97 exhibits species-specific changes of its ATPase activity and compromises the UBXD9-mediated monomerisation of p97 hexamers. Eur J Cell Biol. 2016 Jun-Jul;95(6-7):195-207. PMID: ​
  • Richard H. Gomer, Ramesh Rijal, Ryan J. Rahman. Methods for Activating Immune Cells to Kill Bacteria. Application# PCT/US24/13914 
  • English
  • Nepali

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Areas of Expertise

Cell and Molecular Biology, Microbiology and Immunology